Stefan Verhoeven
haddock3
Haddock3 (High Ambiguity Driven protein-protein DOCKing) is a an information-driven flexible docking approach for the modeling of biomolecular complexes.
- Inter-operability & linked data
- Python
- Fortran
- NASL
- + 3
ESMValTool
The Earth System Model eValuation Tool is a community diagnostics and performance metrics tool for the evaluation of Earth System Models that allows for routine comparison of models and observations.
- Big data
- Optimized data handling
- Visualization
- + 1
- NCL
- Python
- R
- + 6
MAGMa
MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.
- Big data
- Visualization
- Python
- JavaScript
- Makefile
- + 5
Research Software Directory
A content management system for research software, which promotes the visibility, reuse, and impact of research software.
- FAIR
- Research Software Impact
- Software Citation
- TypeScript
- Java
- PLpgSQL
- + 7
Xenon
If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.
- batch-job
- distributed computing
- FTP
- + 11
- Java
- Shell
- Batchfile
Xenon command line interface
A command line interface for the Xenon library that allows you to use remote machines to do your computations.
- High performance computing
- Java
- Common Workflow Language
- Dockerfile
- + 2
eEcology Annotation Tool
Visualize and annotate GPS measurements of bird movements.
- Inter-operability & linked data
- Visualization
- HTML
- Python
- Mako
- + 5
MagnumPI - Potential Integrator
A package for the calculation of scattering angles and cross sections.
- Inter-operability & linked data
- Visualization
- C++
- Mathematica
- Python
- + 2
cffinit
A web form to initialize CITATION.cff files which you can use to include citation information into your software repository.
- Software Citation
- TypeScript
- Vue
- JavaScript
- + 3
cffconvert
Command line tool to convert CITATION.cff files to various formats used by reference managers such as Zotero and JabRef.
- Python
- TeX
- HTML
- + 1
Xenon gRPC server
Run applications remotely via a gRPC interface.
- High performance computing
- Java
3D-e-Chem Virtual Machine
A freely available Virtual Machine encompassing tools, databases, and workflows for cheminformaticians, including new resources developed for ligand binding site comparisons and GPCR research.
- Inter-operability & linked data
- Workflow technologies
- Shell
- Smarty