nanomesh

Python workflow tool for generating meshes from 2D and 3D microscopy image data

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contributors
269 commits | Last update: May 09, 2022

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What nanomesh can do for you

  • Segment and mesh 2D or 3D image data
  • Mesh visualization
  • Easy-to-use Python API
  • Calculate cell metrics
  • Export to many mesh formats

Python workflow tool for generating meshes from 2D and 3D microscopy image data. It has an easy-to-use API that can help process and segment image data, generate quality meshes, and write the data to many mesh formats. Nanomesh also contains tools to inspect and visualize the meshes, and generate cell quality metrics.

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Tags
  • Image processing
  • Visualization
  • Workflow technologies
Programming Language
  • Python
License
  • Apache-2.0
Source code

Contributors

  • Stef Smeets
    Netherlands eScience Center
  • Nicolas Renaud
    Netherlands eScience Center
  • Lars Corbijn van Willenswaard
    University of Twente
Contact person
Stef Smeets
Netherlands eScience Center

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